2013

Microarray and morphological analysis of early postnatal CRB2 mutantretinas on a pure C57BL/6J genetic background

Alves, C.H., Bossers, K., Vos, R.M., Essing, A.H.W., Swagemakers, S., Van Der Spek, P.J., Verhaagen, J., and Wijnholds, J. (2013)
PLoS ONE 8

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855766/

 

Ustekinumab improves psoriasis-related gene expression in noninvolved psoriatic skin without inhibition of the antimicrobial response
Baerveldt, E.M., Onderdijk, A.J., Kurek, D., Kant, M., Florencia, E.F., Ijpma, A.S., Van Der Spek, P.J., Bastiaans, J., Jansen, P.A., Van Kilsdonk, J.W.J., Laman J.D., and Prens, E.P. (2013)
British Journal of Dermatology 168, 990-998

http://onlinelibrary.wiley.com/doi/10.1111/bjd.12175/abstract;jsessionid=5B738EC1DCF839C164AC3FAE42667C6E.d04t01

 

Diagnostic techniques and criteria for first-trimester conjoined twin documentation: A review of the literature illustrated by three recent cases
Baken, L., Rousian, M., Kompanje, E.J.O., Koning, A.H.J., Van Der Spek, P.J., Steegers, E.A.P., and Exalto, N. (2013)
Obstetrical and Gynecological Survey 68, 743-752
http://ovidsp.tx.ovid.com/sp-3.11.0a/ovidweb.cgi?T=JS&PAGE=fulltext&D=ovft&AN=00006254-201311000-00011&NEWS=N&CSC=Y&CHANNEL=PubMed

 

First-trimester crown-rump length and embryonic volume of aneuploid fetuses measured in virtual reality
Baken, L., Van Heesch, P.N.A.C.M., Wildschut, H.I.J., Koning, A.H.J., Van Der Spek, P.J., Steegers, E.A.P., and Exalto, N. (2013)
Ultrasound in Obstetrics and Gynecology 41, 521-525
http://humrep.oxfordjournals.org/content/early/2013/03/05/humrep.det035.long

 

Wnt5a promotes human colon cancer cell migration and invasion but does not augment intestinal tumorigenesis in apc1638N mice
Bakker, E.R., Das, A.M., Helvensteijn, W., Franken, P.F., Swagemakers, S., Valk, M.A.D., Ten Hagen, T.L., Kuipers, E.J., Van Veelen, W., and Smits, R. (2013)
Carcinogenesis 34, 2629-2638

http://ovidsp.tx.ovid.com/sp-3.11.0a/ovidweb.cgi?T=JS&PAGE=fulltext&D=ovft&AN=00002700-201311000-00030&NEWS=N&CSC=Y&CHANNEL=PubMed

 

Is there an effect of obstructive sleep apnea syndrome on oxidative stress and inflammatory parameters in patients with craniofacial anomalies?
Driessen, C., Plomp, R.G., Van Der Spek, P.J., Ince, C., Kulik, W., Mathijssen, I.M., and Joosten, K.F. (2013)
Journal of Craniofacial Surgery 24, 1908-1913.
http://ovidsp.tx.ovid.com/sp-3.11.0a/ovidweb.cgi?T=JS&PAGE=fulltext&D=ovft&AN=00001665-201311000-00009&NEWS=N&CSC=Y&CHANNEL=PubMed

 

The Hypoxia-Inducible MicroRNA Cluster miR-199a214 targets myocardial PPARδ and impairs mitochondrial fatty acid oxidation
El Azzouzi, H., Leptidis, S., Dirkx, E., Hoeks, J., Van Bree, B., Brand, K., McClellan, E.A., Poels, E., Sluimer, J.C., Van Den Hoogenhof, M.M.G., Armand, A.S., Yin, X., Langley, S., Bourajjaj, M., Olieslagers, S., Krishnan, J., Vooijs, M., Kurihara, H., Stubbs, A., Pinto, Y.M., Krek, W., Mayr, M., da Costa Martins, P.A., Schrauwen, P., and De Windt, L.J. (2013)
Cell Metabolism 18, 341-354
http://www.sciencedirect.com/science/article/pii/S1550413113003355

 

Complex craniosynostosis is associated with the 2p15p16.1 microdeletion syndrome
Florisson, J.M., Mathijssen, I.M., Dumee, B., Hoogeboom, J.A., Poddighe, P.J., Oostra, B.A., Frijns, J.P., Koster, L., de Klein, A., Eussen, B., de Vries, B.B., Swagemakers, S., van der Spek, P.J., Verkerk, A.J. (2013)
American Journal of Medical Genetics, Part A 161, 244-253
http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.35632/abstract;jsessionid=F072A667D4841D92DE3344351D608E80.f03t02

 

Boston type craniosynostosis: Report of a second mutation in MSX2

Florisson, J.M.G., Verkerk, A.J.M.H., Huigh, D., Hoogeboom, A.J.M., Swagemakers, S., Kremer, A., Heijsman, D., Lequin, M.H., Mathijssen, I.M.J., and van der Spek, P.J. (2013)
American Journal of Medical Genetics, Part A 161, 2626-2633
http://ovidsp.tx.ovid.com/sp-3.11.0a/ovidweb.cgi?T=JS&PAGE=fulltext&D=ovft&AN=01445366-201310000-00034&NEWS=N&CSC=Y&CHANNEL=PubMed

 

iFUSE: integrated fusion gene explorer
Hiltemann, S., McClellan, E.A., Van Nijnatten, J., Horsman, S., Palli, I., Alves, I.T., Hartjes, T., Trapman, J., Van Der Spek, P., Jenster, G., Stubbs, A. (2013)
Bioinformatics 29, 1700-1701
http://bioinformatics.oxfordjournals.org/content/29/13/1700.long

 

Circulating cells as predictors of secondary manifestations of cardiovascular disease: Design of the CIRCULATING CELLS study
Hoefer, I.E., Sels, J.W., Jukema, J.W., Bergheanu, S., Biessen, E., McClellan, E., Daemen, M., Doevendans, P., De Groot, P., Hillaert, M., Horsman, S., Ilhan, M., Kuiper, J., Pijls, N., Redekop, K., van der Spek, P., Stubbs, A., van de Veer, E., Waltenberger, J., van Zonneveld, A.J., and Pasterkamp, G. (2013)
Clinical Research in Cardiology 102, 847-856
http://link.springer.com/article/10.1007%2Fs00392-013-0607-9

 

Loss of E-cadherin is not a necessity for epithelial to mesenchymal transition in human breast cancer
Hollestelle, A., Peeters, J.K., Smid, M., Timmermans, M., Verhoog, L.C., Westenend, P.J., Heine, A.A.J., Chan, A., Sieuwerts, A.M., Wiemer, E.A.C., Klijn, J.G., van der Spek, P.J., Foekens, J.A., Schutte, M., den Bakker, M.A., and Martens, J.W. (2013)
Breast Cancer Research and Treatment 138, 47-57
http://link.springer.com/article/10.1007%2Fs10549-013-2415-3

 

Hypoxia Inducible Factor 3α Plays a Critical Role in Alveolarization and Distal Epithelial Cell Differentiation during Mouse Lung Development
Huang, Y., Kapere Ochieng, J., Kempen, M.B.V., Munck, A.B.D., Swagemakers, S., van Ijcken, W., Grosveld, F., Tibboel, D., and Rottier, R.J. (2013)
PLoS ONE 8
http://europepmc.org/abstract/MED/23451260/reload=0;jsessionid=Kaf4zX9esKjO8rqWtlHb.12

 

NetWeAvers: An R package for integrative biological network analysis with mass spectrometry data McClellan, E.A., Moerland, P.D., Van Der Spek, P.J., and Stubbs, A.P. (2013)
Bioinformatics 29, 2946-2947
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3810856/

 

Structural and expression differences between the vasculature of pilocytic astrocytomas and glioblastomas
Mustafa, D., Swagemakers, S., French, P., Luider, T.M., Van Der Spek, P., Kremer, A., and Kros, J.M. (2013)
Journal of Neuropathology and Experimental Neurology 72, 1171-1181

http://ovidsp.tx.ovid.com/sp-3.11.0a/ovidweb.cgi?T=JS&PAGE=fulltext&D=ovft&AN=00005072-201312000-00007&NEWS=N&CSC=Y&CHANNEL=PubMed

 

Progressive cerebellar atrophy and polyneuropathy: Expanding the spectrum of PNKP mutations
Poulton, C., Oegema, R., Heijsman, D., Hoogeboom, J., Schot, R., Stroink, H., Willemsen, M.A., Verheijen, F.W., Van De Spek, P., Kremer, A., and Mancini, G.M. (2013)
Neurogenetics 14, 43-51
http://link.springer.com/article/10.1007%2Fs10048-012-0351-8

 

Human embryonic growth and development of the cerebellum using 3-dimensional ultrasound and virtual reality
Rousian, M., Groenenberg, I.A.L., Hop, W.C., Koning, A.H.J., Van Der Spek, P.J., Exalto, N., and Steegers, E.A.P. (2013)
Reproductive Sciences 20, 899-908
http://rsx.sagepub.com/content/early/2013/01/03/1933719112468950.long

 

First trimester brain ventricle fluid and embryonic volumes measured by three-dimensional ultrasound with the use of I-Space virtual reality
Rousian, M., Hop, W.C., Koning, A.H.J., Van Der Spek, P.J., Exalto, N., and Steegers, E.A.P. (2013)
Human Reproduction 28, 1181-1189
http://humrep.oxfordjournals.org/content/early/2013/03/05/humrep.det035.long

 

miMsg: a target enrichment algorithm for predicted miR-mRNA interactions based on relative ranking of matched expression data
Rijlaarsdam MA, Rijlaarsdam DJ, Gillis AJ, Dorssers LC, Looijenga LH. (2013)
Bioinformatics 29, 1638-1646
http://bioinformatics.oxfordjournals.org/content/29/13/1638.long

 

Erratum: Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis

Sharma, V.P., Fenwick, A.L., Brockop, M.S., McGowan, S.J., Goos, J.A.C., Hoogeboom, A.J.M., Brady, A.F., Jeelani, N.O., Lynch, S.A., Mulliken, J.B., Murray, D.J., Phipps, J.M., Sweeney, E., Tomkins, S.E., Wilson, L.C., Bennett, S., Cornall, R.J., Broxholme, J., Kanapin, A.; 500 Whole-Genome Sequences (WGS500) Consortium, Johnson, D., Wall, S.A., van der Spek, P.J., Mathijssen, I.M., Maxson, R.E., Twigg, S.R., and Wilkie, A.O. (2013)
(Nature Genetics (2013) 45 (304-307)). Nature Genetics 45, 1261.
http://www.nature.com/ng/journal/v45/n3/full/ng.2531.html

 

Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis
Sharma, V.P., Fenwick, A.L., Brockop, M.S., McGowan, S.J., Goos, J.A.C., Hoogeboom, A.J.M., Brady, A.F., Jeelani, N.O., Lynch, S.A., Mulliken, J.B., Murray, D.J., Phipps, J.M., Sweeney, E., Tomkins, S.E., Wilson, L.C., Bennett, S., Cornall, R.J., Broxholme, J., Kanapin, A.; 500 Whole-Genome Sequences (WGS500) Consortium, Johnson, D., Wall, S.A., van der Spek, P.J., Mathijssen, I.M., Maxson, R.E., Twigg, S.R., and Wilkie, A.O.  (2013)
Nature Genetics 45, 304-307
http://www.nature.com/ng/journal/v45/n3/full/ng.2531.html

 

Gene fusions by chromothripsis of chromosome 5q in the VCaP prostate cancer cell line
Teles Alves, I., Hiltemann, S., Hartjes, T., Van Der Spek, P., Stubbs, A., Trapman, J., and Jenster, G. (2013)

Human Genetics 132, 709-713
http://link.springer.com/content/pdf/10.1007%2Fs00439-013-1308-1.pdf

 

Gene expression analysis of peripheral cells for subclassification of pediatric inflammatory bowel disease in remission
van Lierop, P.P., Swagemakers, S.M., de Bie, C.I., Middendorp, S., van Baarlen, P., Samsom, J.N., van Ijcken, W.F., Escher, J.C., van der Spek, P.J., Nieuwenhuis, E.E. (2013)
PLoS One. 8:e79549
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3832619/

 

Periconception maternal characteristics and embryonic growth trajectories: the Rotterdam Predict study
van Uitert, E.M., van der Elst-Otte, N., Wilbers, J.J., Exalto, N., Willemsen, S.P., Eilers, P.H., Koning, A.H., Steegers, E.A., and Steegers-Theunissen, R.P. (2013)
Hum Reprod. 28, 3188-96

http://ovidsp.tx.ovid.com/sp-3.11.0a/ovidweb.cgi?T=JS&PAGE=fulltext&D=ovft&AN=00004683-201312000-00003&NEWS=N&CSC=Y&CHANNEL=PubMed

 

Human embryonic growth trajectories and associations with fetal growth and birthweight
van Uitert, E.M., Exalto, N., Burton, G.J., Willemsen, S.P., Koning, A.H., Eilers, P.H., Laven, J.S., Steegers, E.A., and Steegers-Theunissen, R.P. (2013)

Hum Reprod. 28, 1753-61
http://www.ncbi.nlm.nih.gov/pubmed/24105824

 

Intratumoral, not circulating, endothelial progenitor cells share genetic aberrations with glial tumor cells
Zheng, P.P., van der Weiden, M., van der Spek, P.J., Vincent, A.J.P.E., and Kros, J.M. (2013)
Journal of Cellular Physiology 228, 1383-1390
http://onlinelibrary.wiley.com/doi/10.1002/jcp.24309/abstract