clean_tree: Software for high-resolution male lineage classification

Always cite the following reference when using CleanTree in publications and refer to it when using other how:

Simultaneous analysis of hundreds of Y-chromosomal SNPs for high-resolution paternal lineage classification using targeted semiconductor sequencing.
Ralf, A., van Oven, M., Zhong, K., Kayser, M. Simultaneous analysis of hundreds of Y-chromosomal SNPs for high-resolution paternal lineage classification using targeted semiconductor sequencing. Hum Mutat. 2015 36: 151-9. PubMed: 25338970

Clean tree is a tool intended to help interpret phylogenetic SNP genotypes obtained from NGS-data, furthermore it uses a quality control system to ensure the accuracy of the obtained results.